Here is the command list of pygate¶

pygate
- analysis
  
  predefined
  
  script
- clean
- generate
  
  cfg
  
  mac
  
  predefined
  
  script
  
  mac_template
  
  shell
- init
  
  auto
  
  bcast
  
  ext
  
  subdir
- merge
- submit

$ pygate¶

Usage: pygate [OPTIONS] COMMAND [ARGS]…

Options:

`-c, --config TEXT`
	config file name
`--no-config`	ignore config file
`--dryrun`	Do not do anything, just show expected results.
`--help`	Show this message and exit.

Commands:

analysis
clean
generate
init
merge
submit

$ pygate analysis¶

Usage: pygate analysis [OPTIONS] COMMAND [ARGS]…

Options:

--help

Show this message and exit.

Commands:

predefined
script

$ pygate analysis predefined¶

Usage: pygate analysis predefined [OPTIONS]

Options:

`-n, --name TEXT`
	Predefined analysis type name.
`-s, --source TEXT`
	Analysis source data filename.
`-o, --output TEXT`
	Analysis target data filename.
`--help`	Show this message and exit.

$ pygate analysis script¶

Usage: pygate analysis script [OPTIONS]

Options:

`-t, --target TEXT`
	Analysis .py filename.
`-s, --source TEXT`
	Analysis source data filename.
`-o, --output TEXT`
	Output filename.
`--help`	Show this message and exit.

$ pygate clean¶

Usage: pygate clean [OPTIONS]

Options:

`-d, --subdirectories`
	remove subdirectories
`-f, --root-files TEXT`
	remove files in work directory
`-s, --slurm-outputs`
	remove .out .err files
`--help`	Show this message and exit.

$ pygate generate¶

Usage: pygate generate [OPTIONS] COMMAND [ARGS]…

Options:

--help

Show this message and exit.

Commands:

cfg           Generate initial config file.
mac           Generate mac file.
mac_template
shell         Generate shell script, pre run or post run.

$ pygate generate cfg¶

Usage: pygate generate cfg [OPTIONS]

Generate initial config file.

Options:

`-t, --target TEXT`
	Config file name.
`-f, --format TEXT`
	Format of config file, json or yml
`--help`	Show this message and exit.

$ pygate generate mac¶

Usage: pygate generate mac [OPTIONS] COMMAND [ARGS]…

Generate mac file.

Options:

--help

Show this message and exit.

Commands:

predefined  Generate mac file by predefined system.
script      Generate mac file by running a .py file.

$ pygate generate mac predefined¶

Usage: pygate generate mac predefined [OPTIONS]

Generate mac file by predefined system.

Options:

`-p, --predefined TEXT`
	Name of predefined system to generate mac file.
`-c, --config TEXT`
	config filename to generate macs.
`-t, --target TEXT`
	MAC filename, will passed to script or predefined method.
`--help`	Show this message and exit.

$ pygate generate mac script¶

Usage: pygate generate mac script [OPTIONS]

Generate mac file by running a .py file.

Options:

`-t, --target TEXT`
	Filename of script to run to generate mac file.
`-c, --config TEXT`
	config filename to generate macs.
`-o, --output TEXT`
	MAC filename, will passed to script or predefined method.
`--help`	Show this message and exit.

$ pygate generate mac_template¶

Usage: pygate generate mac_template [OPTIONS]

Options:

`-f, --filename TEXT`
	Show the file name.
`--help`	Show this message and exit.

$ pygate generate shell¶

Usage: pygate generate shell [OPTIONS]

Generate shell script, pre run or post run.

Options:

--help

Show this message and exit.

$ pygate init¶

Usage: pygate init [OPTIONS] COMMAND [ARGS]…

Options:

--help

Show this message and exit.

Commands:

auto
bcast
ext     Copy external files.
subdir

$ pygate init auto¶

Usage: pygate init auto [OPTIONS]

Options:: –mac-auto –mac-no-create –mac-force-create –help Show this message and exit.

$ pygate init bcast¶

Usage: pygate init bcast [OPTIONS]

Options:

`-t, --target INTEGER`
	Files to broadcast to subdirectories.
`-e, --no-ext`	Include all external files.
`--help`	Show this message and exit.

$ pygate init ext¶

Usage: pygate init ext [OPTIONS]

Copy external files.

Options:

--help

Show this message and exit.

$ pygate init subdir¶

Usage: pygate init subdir [OPTIONS]

Options:

`-n, --nb-split INTEGER`
	Number of subdirectories.
`-f, --sub-format TEXT`
	Subdirectories format str.
`--help`	Show this message and exit.

$ pygate merge¶

Usage: pygate merge [OPTIONS]

Options:

`-t, --target TEXT`
	Target str.
`-m, --method TEXT`
	Method str.
`--help`	Show this message and exit.

$ pygate submit¶

Usage: pygate submit [OPTIONS]

Options:

`-b, --broadcast TEXT`
	Broadcast file str.
`-s, --single TEXT`
	Single str.
`--help`	Show this message and exit.